Mercurial > repos > jjohnson > gatk2
changeset 19:d1a88bdaa80a draft
remove thread options from realigner_target_creator.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 28 Dec 2012 11:08:23 -0600 |
| parents | 7533db8dfb5b |
| children | 3924f62cd4e7 |
| files | realigner_target_creator.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/realigner_target_creator.xml Thu Dec 20 11:01:55 2012 -0600 +++ b/realigner_target_creator.xml Fri Dec 28 11:08:23 2012 -0600 @@ -16,7 +16,7 @@ -T "RealignerTargetCreator" -o "${output_interval}" \$GATK2_SITE_OPTIONS - \$GATK2_THREAD_OPTIONS + ## \$GATK2_THREAD_OPTIONS ##-et "NO_ET" -K "/data/galaxy/appList/GenomeAnalysisTK-2.0-36-gf5c1c1a/gatk2_key_file" ##ET no phone home ##--num_threads 4 ##hard coded, for now ##-log "${output_log}" ##don't use this to log to file, instead directly capture stdout