gatk2: revision graph

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VariantFiltration should not have -nt option since it does not implemnt TreeReducible draft default tip
Tue, 05 Mar 2013 11:15:13 -0600, by Jim Johnson
Update options for UnifiedGenotyper p_nonref_model for version 2.3 draft
Mon, 04 Mar 2013 21:37:30 -0600, by Jim Johnson
unified_genotyper - indelGap penalty param need to be integer values draft
Fri, 01 Mar 2013 12:43:41 -0600, by Jim Johnson
Fix commandline template draft
Fri, 01 Mar 2013 08:07:56 -0600, by Jim Johnson
Fix default read filter screening draft
Fri, 01 Mar 2013 07:52:02 -0600, by Jim Johnson
Update tool version to 0.0.7 draft
Thu, 28 Feb 2013 15:41:24 -0600, by Jim Johnson
Omit --read_filter param included by default draft
Thu, 28 Feb 2013 15:32:04 -0600, by Jim Johnson
unified_genotyper - add sample_poidy param draft
Thu, 28 Feb 2013 12:45:44 -0600, by Jim Johnson
variant_recalibrator Omit --read_filter for MalformedReadFilter since it included by default, allows --filter_mismatching_base_and_quals to be set draft
Thu, 28 Feb 2013 12:44:55 -0600, by Jim Johnson
Temporarily use my own copy of samtools - correct name draft
Tue, 19 Feb 2013 21:04:33 -0600, by Jim Johnson
Temporarily use my own copy of samtools until cross dependency support is in release draft
Tue, 19 Feb 2013 20:59:51 -0600, by Jim Johnson
Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
Mon, 18 Feb 2013 15:48:46 -0600, by Jim Johnson

less more | rev 39: (0) -12 tip