| Tue, 05 Mar 2013 11:15:13 -0600 |
Jim Johnson |
VariantFiltration should not have -nt option since it does not implemnt TreeReducible
draft default tip
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| Mon, 04 Mar 2013 21:37:30 -0600 |
Jim Johnson |
Update options for UnifiedGenotyper p_nonref_model for version 2.3
draft
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| Fri, 01 Mar 2013 12:43:41 -0600 |
Jim Johnson |
unified_genotyper - indelGap penalty param need to be integer values
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| Fri, 01 Mar 2013 08:07:56 -0600 |
Jim Johnson |
Fix commandline template
draft
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| Fri, 01 Mar 2013 07:52:02 -0600 |
Jim Johnson |
Fix default read filter screening
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| Thu, 28 Feb 2013 15:41:24 -0600 |
Jim Johnson |
Update tool version to 0.0.7
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| Thu, 28 Feb 2013 15:32:04 -0600 |
Jim Johnson |
Omit --read_filter param included by default
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| Thu, 28 Feb 2013 12:45:44 -0600 |
Jim Johnson |
unified_genotyper - add sample_poidy param
draft
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| Thu, 28 Feb 2013 12:44:55 -0600 |
Jim Johnson |
variant_recalibrator Omit --read_filter for MalformedReadFilter since it included by default, allows --filter_mismatching_base_and_quals to be set
draft
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| Tue, 19 Feb 2013 21:04:33 -0600 |
Jim Johnson |
Temporarily use my own copy of samtools - correct name
draft
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| Tue, 19 Feb 2013 20:59:51 -0600 |
Jim Johnson |
Temporarily use my own copy of samtools until cross dependency support is in release
draft
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| Mon, 18 Feb 2013 15:48:46 -0600 |
Jim Johnson |
Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values
draft
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