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changeset 11:56bdf6d4ac9c

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cuffdiff_wrapper.xml - allow either gtf of gff3 format for annotation input.
author Jim Johnson <jj@umn.edu>
date Fri, 19 Oct 2012 13:41:16 -0500
parents 45275147ac1e
children e132e60f95b1
files cuffdiff_wrapper.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cuffdiff_wrapper.xml	Wed Oct 17 12:00:55 2012 -0500
+++ b/cuffdiff_wrapper.xml	Fri Oct 19 13:41:16 2012 -0500
@@ -114,7 +114,7 @@
 
     </command>
     <inputs>
-        <param format="gtf" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/>
+        <param format="gtf,gff3" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/>
         <conditional name="group_analysis"> 
             <param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group.">
                 <option value="No">No</option>