# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1350672076 18000
# Node ID 56bdf6d4ac9ca8d1efdf227788ecfed9e5c40841
# Parent  45275147ac1e7598835f2e08861cdc5372641774
cuffdiff_wrapper.xml - allow either gtf of gff3 format for annotation input.

diff -r 45275147ac1e -r 56bdf6d4ac9c cuffdiff_wrapper.xml
--- a/cuffdiff_wrapper.xml	Wed Oct 17 12:00:55 2012 -0500
+++ b/cuffdiff_wrapper.xml	Fri Oct 19 13:41:16 2012 -0500
@@ -114,7 +114,7 @@
 
     </command>
     <inputs>
-        <param format="gtf" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/>
+        <param format="gtf,gff3" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/>
         <conditional name="group_analysis"> 
             <param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group.">
                 <option value="No">No</option>