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annotate tool_dependencies.xml @ 9:55e57243b131

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Add install PREFIX to make install command in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Thu, 13 Sep 2012 19:54:21 -0500
parents 438677e99ef8
children 211ca88ce047
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cd-hit" version="4.6.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
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7 <action type="shell_command">mkdir -p $INSTALL_DIR/bin/</action>
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8 <action type="shell_command">pwd</action>
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9 <action type="shell_command">ls</action>
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10 <action type="shell_command">cd cd-hit-v4.6.1-2012-08-27</action>
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11 <action type="shell_command">make openmp=yes</action>
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12 <action type="shell_command">make PREFIX=$INSTALL_DIR/bin/ install</action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 These links provide information for building the cdhit package:
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20
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21 http://weizhong-lab.ucsd.edu/cd-hit/
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23 https://code.google.com/p/cdhit/
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25 https://code.google.com/p/cdhit/source/browse/README
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27 </readme>
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28 </package>
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29 </tool_dependency>
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