Mercurial > repos > jjohnson > cdhit

annotate tool_dependencies.xml @ 8:438677e99ef8

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add install PREFIX to make command in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Thu, 13 Sep 2012 15:58:08 -0500
parents 3961e84d6225
children 55e57243b131
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1 <?xml version="1.0"?>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2 <tool_dependency>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
3 <package name="cd-hit" version="4.6.1">
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
4 <install version="1.0">
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
5 <actions>
6
f0c20796d33a Update tool_dependencies, reinstate test
Jim Johnson <jj@umn.edu>
parents: 1
diff changeset
6 <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
7
3961e84d6225 Add install PREFIX to make command in tool_dependencies.xml
Jim Johnson <jj@umn.edu>
parents: 6
diff changeset
7 <action type="shell_command">mkdir -p $INSTALL_DIR/bin/</action>
8
438677e99ef8 Add install PREFIX to make command in tool_dependencies.xml
Jim Johnson <jj@umn.edu>
parents: 7
diff changeset
8 <action type="shell_command">make openmp=yes PREFIX=$INSTALL_DIR/bin/ install</action>
1
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
9 <action type="set_environment">
7
3961e84d6225 Add install PREFIX to make command in tool_dependencies.xml
Jim Johnson <jj@umn.edu>
parents: 6
diff changeset
10 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
1
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
11 </action>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
12 </actions>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
13 </install>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
14 <readme>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
15 These links provide information for building the cdhit package:
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
16
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
17 http://weizhong-lab.ucsd.edu/cd-hit/
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
18
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
19 https://code.google.com/p/cdhit/
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
20
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
21 https://code.google.com/p/cdhit/source/browse/README
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
22
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
23 </readme>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
24 </package>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
25 </tool_dependency>
12447208b8cb Add tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
diff changeset
26