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1 <tool id="pytime" name="pY_Data_Cleanup" version="1.0.0">
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2 <description>kinatest data cleanup</description>
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3 <requirements>
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4 <requirement type="package">R</requirement>
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5 </requirements>
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6 <command><![CDATA[
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7 ln -s '$needy' needspy.csv &&
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8 Rscript '$__tool_directory__/xytime.R'
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9 ]]></command>
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10 <inputs>
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11 <param format="csv" name="needy" type="data" label="Needs pY"/>
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12 </inputs>
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13 <outputs>
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14 <data format="csv" name="py" from_work_dir="haspy.csv"/>
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="needy" ftype="csv" value="needspy.csv"/>
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19 <output name="py" file="haspy.csv"/>
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20 </test>
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21 </tests>
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22 <help><![CDATA[
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23 This simply tool is only intended for a specific step in the kinatest pathway wherein it performs some data cleanup.
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24 ]]></help>
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25 <citations>
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26 <citation type="doi">10.1021/ja507164a</citation>
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27 </citations>
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28 </tool>
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