Mercurial > repos > jfb > py_data_cleanup

view pYtime/xytime.xml @ 0:16160fe81a16 draft

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author jfb
date Tue, 27 Feb 2018 11:27:07 -0500
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<tool id="pytime" name="pY_Data_Cleanup" version="1.0.0">
    <description>kinatest data cleanup</description>
    <requirements>
       <requirement type="package">R</requirement>
    </requirements>
    <command><![CDATA[
		ln -s '$needy' needspy.csv && 
        Rscript '$__tool_directory__/xytime.R'
    ]]></command>
    <inputs>
		<param format="csv" name="needy" type="data" label="Needs pY"/>
    </inputs>      
    <outputs>
        <data format="csv" name="py" from_work_dir="haspy.csv"/>
    </outputs>
    <tests>
        <test>
            <param name="needy" ftype="csv" value="needspy.csv"/>
			<output name="py" file="haspy.csv"/>
        </test>
    </tests>
    <help><![CDATA[
	This simply tool is only intended for a specific step in the kinatest pathway wherein it performs some data cleanup.
    ]]></help>
    <citations>
        <citation type="doi">10.1021/ja507164a</citation>
    </citations>
</tool>