Mercurial > repos > jfb > py_data_cleanup

diff pYtime/xytime.xml @ 0:16160fe81a16 draft

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author jfb
date Tue, 27 Feb 2018 11:27:07 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pYtime/xytime.xml	Tue Feb 27 11:27:07 2018 -0500
@@ -0,0 +1,29 @@
+<tool id="pytime" name="pY_Data_Cleanup" version="1.0.0">
+    <description>kinatest data cleanup</description>
+    <requirements>
+       <requirement type="package">R</requirement>
+    </requirements>
+    <command><![CDATA[
+		ln -s '$needy' needspy.csv && 
+        Rscript '$__tool_directory__/xytime.R'
+    ]]></command>
+    <inputs>
+		<param format="csv" name="needy" type="data" label="Needs pY"/>
+    </inputs>      
+    <outputs>
+        <data format="csv" name="py" from_work_dir="haspy.csv"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="needy" ftype="csv" value="needspy.csv"/>
+			<output name="py" file="haspy.csv"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+	This simply tool is only intended for a specific step in the kinatest pathway wherein it performs some data cleanup.
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1021/ja507164a</citation>
+    </citations>
+</tool>
+