Mercurial > repos > jfb > negative_motif_finder_7_7
changeset 5:dbb09ee72b9f draft
Uploaded
| author | jfb |
|---|---|
| date | Thu, 24 May 2018 15:42:14 -0400 |
| parents | 72a38bd09a0b |
| children | 805f6581a5b4 |
| files | NMF/NMF.xml |
| diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/NMF/NMF.xml Tue Feb 27 16:52:21 2018 -0500 +++ b/NMF/NMF.xml Thu May 24 15:42:14 2018 -0400 @@ -13,7 +13,7 @@ <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/> <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/> <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/> - <param name="outGroup" type="text" value"kinase" label="Kinase Name"/> + <param name="outGroup" type="text" value="kinase" label="Kinase Name"/> </inputs> <outputs> <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> @@ -29,9 +29,10 @@ <help><![CDATA[ Using the output from KinaMine, plus the Uniprot file that was used with KinaMine, this program finds all Y-centered motifs which *could* have been present as positive motifs but were not seen by the Mass Spec This tool is intended to be used in conjunction with KinaMine 7-7 and Kinatest.R, the three together creating a GalaxyP version of the KINATEST-ID workbook. -=========== + + Inputs -=========== + **Substrate Background Frequency** **Positive/Phosphorylated Substrate List** These two come directly from the KinaMine output