# HG changeset patch
# User jfb
# Date 1527190934 14400
# Node ID dbb09ee72b9f9063362e8eeb585ca317f2d18439
# Parent  72a38bd09a0ba3a35e11f769b216de868b876895
Uploaded

diff -r 72a38bd09a0b -r dbb09ee72b9f NMF/NMF.xml
--- a/NMF/NMF.xml	Tue Feb 27 16:52:21 2018 -0500
+++ b/NMF/NMF.xml	Thu May 24 15:42:14 2018 -0400
@@ -13,7 +13,7 @@
 		<param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/>
         <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/>
         <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/>
-		<param name="outGroup" type="text" value"kinase" label="Kinase Name"/>
+		<param name="outGroup" type="text" value="kinase" label="Kinase Name"/>
     </inputs>      
     <outputs>
         <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/>
@@ -29,9 +29,10 @@
     <help><![CDATA[
 Using the output from KinaMine, plus the Uniprot file that was used with KinaMine, this program finds all Y-centered motifs which *could* have been present as positive motifs but were not seen by the Mass Spec
 This tool is intended to be used in conjunction with KinaMine 7-7 and Kinatest.R, the three together creating a GalaxyP version of the KINATEST-ID workbook.
-===========
+
+
 Inputs
-===========
+
 **Substrate Background Frequency**
 **Positive/Phosphorylated Substrate List**
 These two come directly from the KinaMine output