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1 <tool id="data_manager_fetch_motifs" name="Motif Database" version="1.0.0" tool_type="manage_data">
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2 <description>fetching</description>
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3 <command interpreter="python">data_manager_fetch_motifs.py "${out_file}" --motif_db ${motif_db_selector}</command>
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4 <inputs>
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5 <param name="motif_db_selector" type="select" label="Choose the source for the motif db">
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6 <option value="test" selected="True">Test Pouya Subset (hg19)</option>
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7 <option value="pouya">Pouya Encode Motifs (hg19)</option>
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8 <option value="jaspar">Jaspar and Jolma Motifs (hg19)</option>
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9 <option value="mouse">Mouse Motifs (mm9)</option>
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10 </param>
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11 </inputs>
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12 <outputs>
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13 <data name="out_file" format="data_manager_json"/>
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14 </outputs>
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15 <help>
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16 **What it does**
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17
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18 Fetches a reference genome from various sources (UCSC, NCBI, URL, Galaxy History, or a server directory) and populates the "all_fasta" data table.
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19
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20 **Notice:** If you leave name, description, or id blank, it will be generated automatically.
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21 </help>
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22 </tool>
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