diff data_manager/data_manager_fetch_motifs.xml @ 0:ba049ce65693 draft

Initial upload

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_fetch_motifs.xml	Sun Jan 11 19:21:52 2015 -0500
@@ -0,0 +1,22 @@
+<tool id="data_manager_fetch_motifs" name="Motif Database" version="1.0.0" tool_type="manage_data">
+    <description>fetching</description>
+    <command interpreter="python">data_manager_fetch_motifs.py "${out_file}" --motif_db ${motif_db_selector}</command>
+    <inputs>
+        <param name="motif_db_selector" type="select" label="Choose the source for the motif db">
+            <option value="test" selected="True">Test Pouya Subset (hg19)</option>
+            <option value="pouya">Pouya Encode Motifs (hg19)</option>
+            <option value="jaspar">Jaspar and Jolma Motifs (hg19)</option>
+            <option value="mouse">Mouse Motifs (mm9)</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json"/>
+    </outputs>
+    <help>
+        **What it does**
+
+        Fetches a reference genome from various sources (UCSC, NCBI, URL, Galaxy History, or a server directory) and populates the "all_fasta" data table.
+
+        **Notice:** If you leave name, description, or id blank, it will be generated automatically. 
+    </help>
+</tool>