Mercurial > repos > jeremie > package_pindel_0_2_5

changeset 6:e43873a77e8c draft

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Uploaded
author jeremie
date Wed, 02 Jul 2014 06:20:23 -0400
parents 8601899ef957
children b68c61d5e995
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jul 02 06:13:35 2014 -0400
+++ b/tool_dependencies.xml	Wed Jul 02 06:20:23 2014 -0400
@@ -20,13 +20,13 @@
 					$BAM_ROOT"
 				</action> -->
 				<action type="shell_command">
-					cp -r $BAM_ROOT/bin samtools
+					cp $BAM_ROOT/bin/* samtools
                 </action>
                 <action type="shell_command">
-					cp -r $BAM_ROOT/lib samtools
+					cp $BAM_ROOT/lib/* samtools
                 </action>
                 <action type="shell_command">
-					cp -r $BAM_ROOT/include/bam samtools
+					cp $BAM_ROOT/include/bam/* samtools
                 </action>
                 <action type="shell_command">ls</action>
                 <action type="shell_command">pwd</action>