# HG changeset patch
# User jeremie
# Date 1404296423 14400
# Node ID e43873a77e8c6c98ba9ab18d17757714ee517b9a
# Parent  8601899ef957a6a98b3a65f563df06dd9e046ecb
Uploaded

diff -r 8601899ef957 -r e43873a77e8c tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 02 06:13:35 2014 -0400
+++ b/tool_dependencies.xml	Wed Jul 02 06:20:23 2014 -0400
@@ -20,13 +20,13 @@
 					$BAM_ROOT"
 				</action> -->
 				<action type="shell_command">
-					cp -r $BAM_ROOT/bin samtools
+					cp $BAM_ROOT/bin/* samtools
                 </action>
                 <action type="shell_command">
-					cp -r $BAM_ROOT/lib samtools
+					cp $BAM_ROOT/lib/* samtools
                 </action>
                 <action type="shell_command">
-					cp -r $BAM_ROOT/include/bam samtools
+					cp $BAM_ROOT/include/bam/* samtools
                 </action>
                 <action type="shell_command">ls</action>
                 <action type="shell_command">pwd</action>