Mercurial > repos > jeremie > package_breakdancer_1_2_6

changeset 6:88209fdd378d draft

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Uploaded
author jeremie
date Thu, 26 Jun 2014 09:16:55 -0400
parents af25cf67aa0b
children bf9475fceac3
files breakdancer.py
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/breakdancer.py	Thu Jun 26 09:16:42 2014 -0400
+++ b/breakdancer.py	Thu Jun 26 09:16:55 2014 -0400
@@ -13,9 +13,10 @@
 tmp_dir = tempfile.mkdtemp()
 errorFile = tmp_dir+"/errorLog"
 
-bam2cfg_path = "/home/jeremie/Tools/breakdancer-1.1.2/perl/bam2cfg.pl"
-breakdancer_path = "/usr/bin/breakdancer-max"
-breakdancer2vcf_path = "/home/jeremie/Tools/breakdancer-1.1.2/breakdancer2vcf.py"
+bam2cfg_path = "bam2cfg.pl"
+# breakdancer_path = "/usr/bin/breakdancer-max"
+breakdancer_path = "breakdancer-max"
+breakdancer2vcf_path = "breakdancer2vcf.py"
 
 
 def bam2cfg(args):