# HG changeset patch
# User jeremie
# Date 1403788615 14400
# Node ID 88209fdd378d65b7ea5cf0b195241d9195bbb911
# Parent  af25cf67aa0bb989dca788bf78fb4036a3303442
Uploaded

diff -r af25cf67aa0b -r 88209fdd378d breakdancer.py
--- a/breakdancer.py	Thu Jun 26 09:16:42 2014 -0400
+++ b/breakdancer.py	Thu Jun 26 09:16:55 2014 -0400
@@ -13,9 +13,10 @@
 tmp_dir = tempfile.mkdtemp()
 errorFile = tmp_dir+"/errorLog"
 
-bam2cfg_path = "/home/jeremie/Tools/breakdancer-1.1.2/perl/bam2cfg.pl"
-breakdancer_path = "/usr/bin/breakdancer-max"
-breakdancer2vcf_path = "/home/jeremie/Tools/breakdancer-1.1.2/breakdancer2vcf.py"
+bam2cfg_path = "bam2cfg.pl"
+# breakdancer_path = "/usr/bin/breakdancer-max"
+breakdancer_path = "breakdancer-max"
+breakdancer2vcf_path = "breakdancer2vcf.py"
 
 
 def bam2cfg(args):