Mercurial > repos > jeremie > breakdancer_test

changeset 16:0fb455068d3c draft

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Uploaded
author jeremie
date Fri, 27 Jun 2014 08:52:40 -0400
parents 743d75da4658
children e7cb65b58ede
files breakdancer.py
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/breakdancer.py	Fri Jun 27 08:43:00 2014 -0400
+++ b/breakdancer.py	Fri Jun 27 08:52:40 2014 -0400
@@ -13,10 +13,11 @@
 tmp_dir = tempfile.mkdtemp()
 errorFile = tmp_dir+"/errorLog"
 
-bam2cfg_path = "bam2cfg.pl"
+currentDir = os.path.dirname(os.path.abspath(__file__))
+bam2cfg_path = currentDir+"/bam2cfg.pl"
 # breakdancer_path = "/usr/bin/breakdancer-max"
 breakdancer_path = "breakdancer-max"
-breakdancer2vcf_path = "breakdancer2vcf.py"
+breakdancer2vcf_path = currentDir+"/breakdancer2vcf.py"
 
 
 def bam2cfg(args):