# HG changeset patch
# User jeremie
# Date 1403873560 14400
# Node ID 0fb455068d3c185547273bb9c6f31f923f1b523d
# Parent  743d75da4658077cb2f3b064412c88076da7e52f
Uploaded

diff -r 743d75da4658 -r 0fb455068d3c breakdancer.py
--- a/breakdancer.py	Fri Jun 27 08:43:00 2014 -0400
+++ b/breakdancer.py	Fri Jun 27 08:52:40 2014 -0400
@@ -13,10 +13,11 @@
 tmp_dir = tempfile.mkdtemp()
 errorFile = tmp_dir+"/errorLog"
 
-bam2cfg_path = "bam2cfg.pl"
+currentDir = os.path.dirname(os.path.abspath(__file__))
+bam2cfg_path = currentDir+"/bam2cfg.pl"
 # breakdancer_path = "/usr/bin/breakdancer-max"
 breakdancer_path = "breakdancer-max"
-breakdancer2vcf_path = "breakdancer2vcf.py"
+breakdancer2vcf_path = currentDir+"/breakdancer2vcf.py"
 
 
 def bam2cfg(args):