Mercurial > repos > jeremie > breakdancer_test
changeset 16:0fb455068d3c draft
Uploaded
author | jeremie |
---|---|
date | Fri, 27 Jun 2014 08:52:40 -0400 |
parents | 743d75da4658 |
children | e7cb65b58ede |
files | breakdancer.py |
diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/breakdancer.py Fri Jun 27 08:43:00 2014 -0400 +++ b/breakdancer.py Fri Jun 27 08:52:40 2014 -0400 @@ -13,10 +13,11 @@ tmp_dir = tempfile.mkdtemp() errorFile = tmp_dir+"/errorLog" -bam2cfg_path = "bam2cfg.pl" +currentDir = os.path.dirname(os.path.abspath(__file__)) +bam2cfg_path = currentDir+"/bam2cfg.pl" # breakdancer_path = "/usr/bin/breakdancer-max" breakdancer_path = "breakdancer-max" -breakdancer2vcf_path = "breakdancer2vcf.py" +breakdancer2vcf_path = currentDir+"/breakdancer2vcf.py" def bam2cfg(args):