Mercurial > repos > jeremie > breakdancer_bin
changeset 8:7cd61ef578b5 draft
Deleted selected files
| author | jeremie |
|---|---|
| date | Wed, 02 Jul 2014 09:46:19 -0400 |
| parents | c971e3f6de9f |
| children | 44d381ebe8a5 |
| files | breakdancer.xml breakdancer_1_2_6.xml tool_dependencies.xml |
| diffstat | 3 files changed, 0 insertions(+), 65 deletions(-) [+] |
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--- a/breakdancer.xml Wed Jul 02 09:46:11 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -<tool id="breakdancer" name="breakdancer" version="1.4.4"> - <description></description> - <parallelism method="basic"></parallelism> - <command interpreter="python"> - breakdancer.py - -i1 $input - -o1 $output_raw - -o2 $output_vcf - </command> - - <!-- <requirements> - <requirement type="package">breakdancer-max</requirement> - </requirements> --> - - <inputs> - <param format="bam" name="input" type="data" help="" label="bam file" /> - </inputs> - - <outputs> - <data name="output_raw" format="tabular" label="breakdancer raw" /> - <data name="output_vcf" format="vcf" label="breakdancer vcf" /> - </outputs> - <help> - - </help> -</tool> \ No newline at end of file
--- a/breakdancer_1_2_6.xml Wed Jul 02 09:46:11 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -<tool id="breakdancer" name="breakdancer" version="1.2.6"> - <description></description> - <parallelism method="basic"></parallelism> - <command interpreter="python"> - breakdancer_1_2_6.py - -i1 $input - -o1 $output_raw - -o2 $output_vcf - </command> - - <!-- <requirements> - <requirement type="package">breakdancer-max</requirement> - </requirements> --> - - <inputs> - <param format="bam" name="input" type="data" help="" label="bam file" /> - </inputs> - - <outputs> - <data name="output_raw" format="tabular" label="breakdancer raw" /> - <data name="output_vcf" format="vcf" label="breakdancer vcf" /> - </outputs> - <help> - - </help> -</tool> \ No newline at end of file
--- a/tool_dependencies.xml Wed Jul 02 09:46:11 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,13 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="breakdancer-max" version="1.4.4"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://drive.google.com/file/d/0B-NlbBomCRJYSE83UE5IQlUtb0U/edit?usp=sharing</action> - </actions> - </install> - <readme> - </readme> - </package> -</tool_dependency> -