# HG changeset patch
# User jeremie
# Date 1404308779 14400
# Node ID 7cd61ef578b5d653c2c2c2840e2e3601ec4e9e23
# Parent  c971e3f6de9ff35e1741aa92404991d2094d317a
Deleted selected files

diff -r c971e3f6de9f -r 7cd61ef578b5 breakdancer.xml
--- a/breakdancer.xml	Wed Jul 02 09:46:11 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-<tool id="breakdancer" name="breakdancer" version="1.4.4">
-	<description></description>
-	<parallelism method="basic"></parallelism>
-		<command interpreter="python">
-			breakdancer.py
-			-i1 $input
-			-o1 $output_raw
-			-o2 $output_vcf
-	</command>
-
- <!--  <requirements>
-		<requirement type="package">breakdancer-max</requirement>
-	</requirements> -->
-
-	<inputs>
-		<param format="bam" name="input" type="data" help=""  label="bam file" />
-	</inputs>
-
-	<outputs>
-		<data name="output_raw" format="tabular" label="breakdancer raw" />
-		<data name="output_vcf" format="vcf" label="breakdancer vcf" />
-	</outputs>
-	<help>
-
-	</help>
-</tool>
\ No newline at end of file
diff -r c971e3f6de9f -r 7cd61ef578b5 breakdancer_1_2_6.xml
--- a/breakdancer_1_2_6.xml	Wed Jul 02 09:46:11 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-<tool id="breakdancer" name="breakdancer" version="1.2.6">
-	<description></description>
-	<parallelism method="basic"></parallelism>
-		<command interpreter="python">
-			breakdancer_1_2_6.py
-			-i1 $input
-			-o1 $output_raw
-			-o2 $output_vcf
-	</command>
-
- <!--  <requirements>
-		<requirement type="package">breakdancer-max</requirement>
-	</requirements> -->
-
-	<inputs>
-		<param format="bam" name="input" type="data" help=""  label="bam file" />
-	</inputs>
-
-	<outputs>
-		<data name="output_raw" format="tabular" label="breakdancer raw" />
-		<data name="output_vcf" format="vcf" label="breakdancer vcf" />
-	</outputs>
-	<help>
-
-	</help>
-</tool>
\ No newline at end of file
diff -r c971e3f6de9f -r 7cd61ef578b5 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 02 09:46:11 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,13 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="breakdancer-max" version="1.4.4">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://drive.google.com/file/d/0B-NlbBomCRJYSE83UE5IQlUtb0U/edit?usp=sharing</action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>
-