Mercurial > repos > jeremie > breakdancer_bin

annotate breakdancer_1_2_6.xml @ 6:4a5a1765951d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Thu, 26 Jun 2014 07:26:50 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
1 <tool id="breakdancer" name="breakdancer" version="1.2.6">
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
2 <description></description>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
3 <parallelism method="basic"></parallelism>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
4 <command interpreter="python">
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
5 breakdancer_1_2_6.py
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
6 -i1 $input
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
7 -o1 $output_raw
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
8 -o2 $output_vcf
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
9 </command>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
10
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
11 <!-- <requirements>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
12 <requirement type="package">breakdancer-max</requirement>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
13 </requirements> -->
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
14
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
15 <inputs>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
16 <param format="bam" name="input" type="data" help="" label="bam file" />
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
17 </inputs>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
18
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
19 <outputs>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
20 <data name="output_raw" format="tabular" label="breakdancer raw" />
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
21 <data name="output_vcf" format="vcf" label="breakdancer vcf" />
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
22 </outputs>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
23 <help>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
24
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
25 </help>
4a5a1765951d Uploaded
jeremie
parents:
diff changeset
26 </tool>