Mercurial > repos > jeremie > breakdancer_bin
comparison breakdancer_1_2_6.xml @ 6:4a5a1765951d draft
Uploaded
author | jeremie |
---|---|
date | Thu, 26 Jun 2014 07:26:50 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
5:798aba6c26a2 | 6:4a5a1765951d |
---|---|
1 <tool id="breakdancer" name="breakdancer" version="1.2.6"> | |
2 <description></description> | |
3 <parallelism method="basic"></parallelism> | |
4 <command interpreter="python"> | |
5 breakdancer_1_2_6.py | |
6 -i1 $input | |
7 -o1 $output_raw | |
8 -o2 $output_vcf | |
9 </command> | |
10 | |
11 <!-- <requirements> | |
12 <requirement type="package">breakdancer-max</requirement> | |
13 </requirements> --> | |
14 | |
15 <inputs> | |
16 <param format="bam" name="input" type="data" help="" label="bam file" /> | |
17 </inputs> | |
18 | |
19 <outputs> | |
20 <data name="output_raw" format="tabular" label="breakdancer raw" /> | |
21 <data name="output_vcf" format="vcf" label="breakdancer vcf" /> | |
22 </outputs> | |
23 <help> | |
24 | |
25 </help> | |
26 </tool> |