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4
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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5
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3 <!-- can only depend on tools in the same toolshed -->
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4 <package name="R_3_1_1" version="3.1.1">
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5 <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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4
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6 </package>
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7
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8 <package name="DNAcopy" version="1.40.0">
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9 <install version="1.0">
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10 <actions>
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11 <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/DNAcopy_1.40.0.tar.gz</action>
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12 <action type="set_environment_for_install">
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5
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13 <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu">
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14 <package name="R_3_1_1" version="3.1.1" />
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4
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15 </repository>
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16 </action>
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17 <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR && R CMD INSTALL DNAcopy_1.40.0.tar.gz</action>
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18 <action type="set_environment">
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19 <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
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20 </action>
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21 </actions>
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22 </install>
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23 <readme>
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24 </readme>
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25 </package>
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26 </tool_dependency>
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