Mercurial > repos > jeltje > package_dnacopy_1_40_0

changeset 5:118417199f06 draft default tip

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Uploaded
author jeltje
date Thu, 08 Jan 2015 16:09:17 -0500
parents 00eddd96019b
children
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jan 08 16:01:05 2015 -0500
+++ b/tool_dependencies.xml	Thu Jan 08 16:09:17 2015 -0500
@@ -1,7 +1,8 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R" version="3.1.2">
-        <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <!-- can only depend on tools in the same toolshed -->
+    <package name="R_3_1_1" version="3.1.1">
+        <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 
     <package name="DNAcopy" version="1.40.0">
@@ -9,8 +10,8 @@
             <actions>
                 <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/DNAcopy_1.40.0.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                            <package name="R" version="3.1.2" />
+                    <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                            <package name="R_3_1_1" version="3.1.1" />
                     </repository>
                 </action>
                 <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL DNAcopy_1.40.0.tar.gz</action>