Mercurial > repos > jeltje > package_dnacopy_1_40_0

diff tool_dependencies.xml @ 4:00eddd96019b draft

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author jeltje
date Thu, 08 Jan 2015 16:01:05 -0500
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children 118417199f06
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jan 08 16:01:05 2015 -0500
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.1.2">
+        <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="DNAcopy" version="1.40.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/DNAcopy_1.40.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="R" version="3.1.2" />
+                    </repository>
+                </action>
+                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL DNAcopy_1.40.0.tar.gz</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>