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1 <tool id="fa_gc_content_1" name="Compute GC content">
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2 <description>for each sequence in a file</description>
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3 <command interpreter="perl">toolExample.pl $input $output</command>
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4 <inputs>
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5 <param format="fasta" name="input" type="data" label="Source file"/>
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6 </inputs>
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7 <outputs>
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8 <data format="tabular" name="output" />
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9 </outputs>
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10
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11 <tests>
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12 <test>
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13 <param name="input" value="input.fa"/>
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14 <output name="out_file1" file="testoutput.txt"/>
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15 </test>
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16 </tests>
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17
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18 <help>
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19 This tool computes GC content from a FASTA file.
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20 </help>
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21
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22 <tests>
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23 <test>
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24 <param name="input1" value="in.fa" />
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25 <output name="output" file="out.txt" />
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26 </test>
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27 </tests>
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28
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29 </tool>
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