changeset 2:f478340e107e draft

Deleted selected files

--- a/detrend_sci.xml	Fri May 03 16:49:11 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,125 +0,0 @@
-<tool id="V17.10_detrend_sci" name="DT" version="0.0.1">
-  <description>  Detrend </description>
-  <requirements>
-  
-  </requirements>
-
-  <command interpreter="bash">scilab_wrapper.sh $script_file</command>
-
-  <configfiles>
-    <configfile name="script_file">
-      //importation de FACT
-      lasterror();
-      f=atomsLoad(["FACT"]);
-      stacksize('max');
-      lasterror(%f);
-
-      //importation des donnees
-      x=glx_tab2div("${Xdata.file_name}");
-
-      // calcul de detrend
-      x2=detrending(x,${degre});
-
-      // Export des resultats
-      kill=div2tab(x2,"${DT}");
-
-      //ecrit le error message dans stderr si erreur
-      if ~isempty(lasterror(%f))
-        write(0,lasterror());
-      end
-    </configfile>
-  </configfiles>
-
- <inputs>
-    <param name="Xdata" format="tabular"  type="data" label="Select X data" help="Dataset (n x p) containing the n spectra of p variables."/>
-    <param name="degre" type="integer" value="2" min="0" max="5" label="Degree of the polynom"/>
-  </inputs>
-
-  <outputs>
-    <data name="DT" format="tabular" label="DT(${Xdata.name})" />
-  </outputs>
- 
-  <tests>
-    <test>
-      <param name="Xdata" value="test_detrend_input.tabular"/>
-      <param name="degre" value="2" />
-    
-      <output name="DT" >
-      <assert_contents> 
-          <has_text text="0.054685"/>
-          <has_text text="0.054962"/>
-          <has_text text="0.054208"/>
-          <has_text text="0.055263"/>
-      </assert_contents>
-       </output>
-
-    </test>
-  </tests> 
-
-<help>
-
-.. class:: warningmark
-
-**TIP:** If your data is not TAB delimited, use *Convert format data Tools-&gt;Convert*
-
-.. class:: infomark
-
-**Authors** Fabien Gogé (IRSTEA), Virginie Rossard (INRA), Eric Latrille (INRA), Jean-Michel Roger (IRSTEA), Jean-Claude Boulet (INRA)
-
-
----------------------------------------------------
-
-=======
-DETREND
-=======
-
------------
-Description
------------
-
-
-Performs **Detrend**, a  baseline correction by orthogonal projection onto a n-order polynomial.
-Missing values are not allowed. This scripts uses the FACT-version module.
-
-
------------
-Input files
------------
-
-A matrix of numeric data with headers (tabular format) and decimal separator ".".
-
-
-+--------+-------+--------+
-| Name   | 400   | 402    |
-+========+=======+========+
-|M102T645| 0.63  |0.64    |
-+--------+-------+--------+
-|M105T604| 0.5   |0.49    |
-+--------+-------+--------+
-
-----------
-Parameters
-----------
-
-**Degree of the polynom**
-
-The degree of the polynom used in the Detrend correction
-
-------------
-Output files
-------------
-
-**DT(input.file_name)**
-
-A dataset containing the input file after the Detrend correction; format = tabular.
-
-</help>
-
-<citations>
-
-  <citation type="doi">10.1366/0003702894202201</citation> 
-
- </citations>
-
-
-</tool>

--- a/scilab_wrapper.sh	Fri May 03 16:49:11 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-#!/bin/sh
-
-### Run scilab providing the scilab script in $1 as standard input and passing
-### the remaining arguments on the command line
-
-# Function that writes a message to stderr and exits
-fail()
-{
-    echo "$@" >&2
-    exit 1
-}
-
-# Ensure scilab executable is found
-which scilab > /dev/null || fail "'scilab' is required by this tool but was not found on path"
-
-# Extract first argument
-infile=$1; shift
-
-# Ensure the file exists
-test -f $infile || fail "scilab input file '$infile' does not exist"
-
-# Invoke scilab passing file named by first argument to stdin
-scilab-cli -nb -noatomsautoload -f $* < $infile