Mercurial > repos > jbrayet > docker_ncpro_seq

changeset 1:8e0da6d34a15 draft

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Uploaded
author jbrayet
date Thu, 28 Jan 2016 07:50:07 -0500
parents 418f50e0f1f6
children cb0f7042a281
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Oct 29 10:19:51 2015 -0400
+++ b/tool_dependencies.xml	Thu Jan 28 07:50:07 2016 -0500
@@ -1,14 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="docker_nc_pro_seq" version="0.1">
+    <package name="docker_ncproseqgalaxy" version="0.1">
         <install version="1.0">
             <actions>
-		<action type="shell_command">wget Dockerfile http://sourceforge.net/projects/ncproseq/files/docker/Dockerfile -P /var/lib/docker</action>
-                <action type="shell_command">docker build -t ncpro:1.0 - &lt; /var/lib/docker/Dockerfile</action>
+                <action type="shell_command">docker pull institutcuriengsintegration/ncproseqgalaxy:1.6.5</action>
             </actions>
         </install>
         <readme>
-ncPRO-seq (Non-Coding RNA PROfiling in sRNA-seq) is a tool for annotation and profiling of ncRNAs using deep-sequencing data developed by the Bioinformatics Laboratory of the institut Curie. This comprehensive and flexible ncRNA analysis pipeline, aims in interrogating and performing detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO-seq pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families.
+
         </readme>
     </package>
 </tool_dependency>