# HG changeset patch # User jbrayet # Date 1453985407 18000 # Node ID 8e0da6d34a15db8dc95d35c71c21eef8b01e8355 # Parent 418f50e0f1f61373782fba3c993d21ce7c0b99b5 Uploaded diff -r 418f50e0f1f6 -r 8e0da6d34a15 tool_dependencies.xml --- a/tool_dependencies.xml Thu Oct 29 10:19:51 2015 -0400 +++ b/tool_dependencies.xml Thu Jan 28 07:50:07 2016 -0500 @@ -1,14 +1,13 @@ - + - wget Dockerfile http://sourceforge.net/projects/ncproseq/files/docker/Dockerfile -P /var/lib/docker - docker build -t ncpro:1.0 - < /var/lib/docker/Dockerfile + docker pull institutcuriengsintegration/ncproseqgalaxy:1.6.5 -ncPRO-seq (Non-Coding RNA PROfiling in sRNA-seq) is a tool for annotation and profiling of ncRNAs using deep-sequencing data developed by the Bioinformatics Laboratory of the institut Curie. This comprehensive and flexible ncRNA analysis pipeline, aims in interrogating and performing detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO-seq pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. +