Mercurial > repos > jbrayet > ccat_1_0_docker
changeset 15:e07fc2fd6bdc draft
Uploaded
author | jbrayet |
---|---|
date | Thu, 21 Jan 2016 10:45:50 -0500 |
parents | 876655b15db4 |
children | a11ad774a6b1 |
files | ccat_wrapper.xml |
diffstat | 1 files changed, 22 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/ccat_wrapper.xml Thu Jan 21 10:41:22 2016 -0500 +++ b/ccat_wrapper.xml Thu Jan 21 10:45:50 2016 -0500 @@ -7,7 +7,7 @@ #if str( $options_type[ 'options_type_selector' ] ) == 'advanced': '$input_advanced_config_file' #else: - '$options_type.input_config_file' + ${options_type[ 'options_type.input_config_file' ]} #end if 'CCAT' '$output_peak_file' '$output_region_file' '$output_top_file' '$output_log_file' '${__root_dir__}'</command> @@ -45,9 +45,27 @@ </conditional> </inputs> <outputs> - <data name="output_peak_file" format="interval" label="${tool.name} on ${on_string} (peaks)" /> - <data name="output_region_file" format="interval" label="${tool.name} on ${on_string} (regions)" /> - <data name="output_top_file" format="interval" label="${tool.name} on ${on_string} (top peaks)" /> + <data name="output_peak_file" format="interval" label="${tool.name} on ${on_string} (peaks)"> + <actions> + <action type="metadata" name="chromCol" default="1"/> + <action type="metadata" name="startCol" default="3"/> + <action type="metadata" name="endCol" default="4"/> + </actions> + </data> + <data name="output_region_file" format="interval" label="${tool.name} on ${on_string} (regions)"> + <actions> + <action type="metadata" name="chromCol" default="1"/> + <action type="metadata" name="startCol" default="3"/> + <action type="metadata" name="endCol" default="4"/> + </actions> + </data> + <data name="output_top_file" format="interval" label="${tool.name} on ${on_string} (top peaks)"> + <actions> + <action type="metadata" name="chromCol" default="1"/> + <action type="metadata" name="startCol" default="3"/> + <action type="metadata" name="endCol" default="4"/> + </actions> + </data> <data name="output_log_file" format="txt" label="${tool.name} on ${on_string} (log)"/> </outputs> <configfiles>