Mercurial > repos > iuc > ucsc_netchainsubset
diff test-data/out.chain @ 0:6d5ab8d81db2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
| author | iuc |
|---|---|
| date | Wed, 14 Jan 2026 09:16:58 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.chain Wed Jan 14 09:16:58 2026 +0000 @@ -0,0 +1,111 @@ +##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +##gapPenalties=axtChain O=400 E=30 +chain 4568 hg38.chr20:10004760-11615810 1611050 + 49202 49378 mm39.chr2:136351215-137822786 1471571 + 42266 42438 13 +99 4 0 +73 + +chain 6961 hg38.chr20:10004760-11615810 1611050 + 84589 84726 mm39.chr2:136351215-137822786 1471571 + 87751 87887 6 +83 1 0 +53 + +chain 6916 hg38.chr20:10004760-11615810 1611050 + 87669 87836 mm39.chr2:136351215-137822786 1471571 + 87101 87269 7 +58 0 1 +109 + +chain 2152 hg38.chr20:10004760-11615810 1611050 + 148667 148736 mm39.chr2:136351215-137822786 1471571 + 158262 158331 15 +10 1 0 +38 0 1 +20 + +chain 13332 hg38.chr20:10004760-11615810 1611050 + 266744 267005 mm39.chr2:136351215-137822786 1471571 - 1226958 1227276 3 +17 0 14 +111 2 0 +42 3 0 +39 0 47 +31 0 1 +16 + +chain 8091 hg38.chr20:10004760-11615810 1611050 + 288114 288275 mm39.chr2:136351215-137822786 1471571 + 260754 260915 5 +161 + +chain 9256 hg38.chr20:10004760-11615810 1611050 + 288278 288554 mm39.chr2:136351215-137822786 1471571 + 260289 260601 4 +34 8 0 +38 0 2 +9 0 17 +11 0 24 +15 0 1 +161 + +chain 5978 hg38.chr20:10004760-11615810 1611050 + 600994 601124 mm39.chr2:136351215-137822786 1471571 + 546215 546345 8 +130 + +chain 3681 hg38.chr20:10004760-11615810 1611050 + 640387 640507 mm39.chr2:136351215-137822786 1471571 + 579921 580041 14 +120 + +chain 5873 hg38.chr20:10004760-11615810 1611050 + 796556 796658 mm39.chr2:136351215-137822786 1471571 + 722616 722717 10 +31 1 0 +70 + +chain 64329 hg38.chr20:10004760-11615810 1611050 + 879848 882025 mm39.chr2:136351215-137822786 1471571 - 648557 650527 2 +24 0 1 +52 12 0 +46 0 6 +24 1 0 +63 0 1 +6 0 9 +78 14 0 +25 0 4 +14 4 0 +4 19 0 +12 9 0 +43 77 0 +19 2 0 +37 2 0 +61 1 0 +16 0 4 +74 0 7 +51 1 0 +30 17 0 +18 1 0 +28 0 2 +125 0 13 +8 0 14 +8 0 3 +88 5 0 +35 0 1 +5 0 1 +6 0 7 +21 0 1 +27 4 0 +64 10 0 +46 2 0 +42 1 0 +54 0 1 +12 1 0 +115 3 0 +10 0 1 +27 1 0 +20 1 0 +42 21 0 +20 2 0 +50 11 0 +8 27 0 +45 1 0 +26 11 0 +5 3 0 +28 2 0 +34 1 0 +24 0 2 +39 1 0 +29 3 0 +68 17 0 +4 0 3 +29 + +chain 5421 hg38.chr20:10004760-11615810 1611050 + 890884 891032 mm39.chr2:136351215-137822786 1471571 - 646945 647095 11 +25 0 2 +123 + +chain 4864 hg38.chr20:10004760-11615810 1611050 + 1425778 1425898 mm39.chr2:136351215-137822786 1471571 + 1342678 1342798 12 +120 +