Mercurial > repos > iuc > ucsc_netchainsubset

annotate test-data/out.chain @ 0:6d5ab8d81db2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
author iuc
date Wed, 14 Jan 2026 09:16:58 +0000
parents
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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diff changeset
1 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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2 ##gapPenalties=axtChain O=400 E=30
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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3 chain 4568 hg38.chr20:10004760-11615810 1611050 + 49202 49378 mm39.chr2:136351215-137822786 1471571 + 42266 42438 13
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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4 99 4 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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5 73
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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7 chain 6961 hg38.chr20:10004760-11615810 1611050 + 84589 84726 mm39.chr2:136351215-137822786 1471571 + 87751 87887 6
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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8 83 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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9 53
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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11 chain 6916 hg38.chr20:10004760-11615810 1611050 + 87669 87836 mm39.chr2:136351215-137822786 1471571 + 87101 87269 7
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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12 58 0 1
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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13 109
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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15 chain 2152 hg38.chr20:10004760-11615810 1611050 + 148667 148736 mm39.chr2:136351215-137822786 1471571 + 158262 158331 15
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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16 10 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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17 38 0 1
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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18 20
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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20 chain 13332 hg38.chr20:10004760-11615810 1611050 + 266744 267005 mm39.chr2:136351215-137822786 1471571 - 1226958 1227276 3
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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21 17 0 14
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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22 111 2 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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23 42 3 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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24 39 0 47
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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25 31 0 1
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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26 16
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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28 chain 8091 hg38.chr20:10004760-11615810 1611050 + 288114 288275 mm39.chr2:136351215-137822786 1471571 + 260754 260915 5
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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29 161
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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31 chain 9256 hg38.chr20:10004760-11615810 1611050 + 288278 288554 mm39.chr2:136351215-137822786 1471571 + 260289 260601 4
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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32 34 8 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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33 38 0 2
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34 9 0 17
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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35 11 0 24
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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37 161
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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39 chain 5978 hg38.chr20:10004760-11615810 1611050 + 600994 601124 mm39.chr2:136351215-137822786 1471571 + 546215 546345 8
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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40 130
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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42 chain 3681 hg38.chr20:10004760-11615810 1611050 + 640387 640507 mm39.chr2:136351215-137822786 1471571 + 579921 580041 14
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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43 120
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45 chain 5873 hg38.chr20:10004760-11615810 1611050 + 796556 796658 mm39.chr2:136351215-137822786 1471571 + 722616 722717 10
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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46 31 1 0
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47 70
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49 chain 64329 hg38.chr20:10004760-11615810 1611050 + 879848 882025 mm39.chr2:136351215-137822786 1471571 - 648557 650527 2
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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50 24 0 1
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51 52 12 0
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6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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84 12 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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85 115 3 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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86 10 0 1
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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87 27 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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88 20 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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89 42 21 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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90 20 2 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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91 50 11 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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92 8 27 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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93 45 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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94 26 11 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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95 5 3 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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96 28 2 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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97 34 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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98 24 0 2
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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99 39 1 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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100 29 3 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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101 68 17 0
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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102 4 0 3
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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103 29
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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104
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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105 chain 5421 hg38.chr20:10004760-11615810 1611050 + 890884 891032 mm39.chr2:136351215-137822786 1471571 - 646945 647095 11
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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106 25 0 2
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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107 123
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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108
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
parents:
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109 chain 4864 hg38.chr20:10004760-11615810 1611050 + 1425778 1425898 mm39.chr2:136351215-137822786 1471571 + 1342678 1342798 12
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
iuc
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110 120
6d5ab8d81db2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
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111