Mercurial > repos > iuc > ucsc_netchainsubset

comparison test-data/out.chain @ 0:6d5ab8d81db2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netchainsubset commit 203061071dae562277de62b43680fc9bae853f35
author iuc
date Wed, 14 Jan 2026 09:16:58 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:6d5ab8d81db2
1 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
2 ##gapPenalties=axtChain O=400 E=30
3 chain 4568 hg38.chr20:10004760-11615810 1611050 + 49202 49378 mm39.chr2:136351215-137822786 1471571 + 42266 42438 13
4 99 4 0
5 73
6
7 chain 6961 hg38.chr20:10004760-11615810 1611050 + 84589 84726 mm39.chr2:136351215-137822786 1471571 + 87751 87887 6
8 83 1 0
9 53
10
11 chain 6916 hg38.chr20:10004760-11615810 1611050 + 87669 87836 mm39.chr2:136351215-137822786 1471571 + 87101 87269 7
12 58 0 1
13 109
14
15 chain 2152 hg38.chr20:10004760-11615810 1611050 + 148667 148736 mm39.chr2:136351215-137822786 1471571 + 158262 158331 15
16 10 1 0
17 38 0 1
18 20
19
20 chain 13332 hg38.chr20:10004760-11615810 1611050 + 266744 267005 mm39.chr2:136351215-137822786 1471571 - 1226958 1227276 3
21 17 0 14
22 111 2 0
23 42 3 0
24 39 0 47
25 31 0 1
26 16
27
28 chain 8091 hg38.chr20:10004760-11615810 1611050 + 288114 288275 mm39.chr2:136351215-137822786 1471571 + 260754 260915 5
29 161
30
31 chain 9256 hg38.chr20:10004760-11615810 1611050 + 288278 288554 mm39.chr2:136351215-137822786 1471571 + 260289 260601 4
32 34 8 0
33 38 0 2
34 9 0 17
35 11 0 24
36 15 0 1
37 161
38
39 chain 5978 hg38.chr20:10004760-11615810 1611050 + 600994 601124 mm39.chr2:136351215-137822786 1471571 + 546215 546345 8
40 130
41
42 chain 3681 hg38.chr20:10004760-11615810 1611050 + 640387 640507 mm39.chr2:136351215-137822786 1471571 + 579921 580041 14
43 120
44
45 chain 5873 hg38.chr20:10004760-11615810 1611050 + 796556 796658 mm39.chr2:136351215-137822786 1471571 + 722616 722717 10
46 31 1 0
47 70
48
49 chain 64329 hg38.chr20:10004760-11615810 1611050 + 879848 882025 mm39.chr2:136351215-137822786 1471571 - 648557 650527 2
50 24 0 1
51 52 12 0
52 46 0 6
53 24 1 0
54 63 0 1
55 6 0 9
56 78 14 0
57 25 0 4
58 14 4 0
59 4 19 0
60 12 9 0
61 43 77 0
62 19 2 0
63 37 2 0
64 61 1 0
65 16 0 4
66 74 0 7
67 51 1 0
68 30 17 0
69 18 1 0
70 28 0 2
71 125 0 13
72 8 0 14
73 8 0 3
74 88 5 0
75 35 0 1
76 5 0 1
77 6 0 7
78 21 0 1
79 27 4 0
80 64 10 0
81 46 2 0
82 42 1 0
83 54 0 1
84 12 1 0
85 115 3 0
86 10 0 1
87 27 1 0
88 20 1 0
89 42 21 0
90 20 2 0
91 50 11 0
92 8 27 0
93 45 1 0
94 26 11 0
95 5 3 0
96 28 2 0
97 34 1 0
98 24 0 2
99 39 1 0
100 29 3 0
101 68 17 0
102 4 0 3
103 29
104
105 chain 5421 hg38.chr20:10004760-11615810 1611050 + 890884 891032 mm39.chr2:136351215-137822786 1471571 - 646945 647095 11
106 25 0 2
107 123
108
109 chain 4864 hg38.chr20:10004760-11615810 1611050 + 1425778 1425898 mm39.chr2:136351215-137822786 1471571 + 1342678 1342798 12
110 120
111