Mercurial > repos > iuc > package_scikit_learn_0_15
annotate tool_dependencies.xml @ 3:ea17a4d6b880 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
author | iuc |
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date | Sun, 17 May 2015 22:44:12 -0400 |
parents | 3e5911e9e134 |
children | b791393983c3 |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <package name="numpy" version="1.9"> | |
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ea17a4d6b880
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
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changeset
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4 <repository changeset_revision="54d5b8add0a8" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
0 | 5 </package> |
6 <package name="scipy" version="0.14"> | |
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ea17a4d6b880
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents:
2
diff
changeset
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7 <repository changeset_revision="888bb18d333b" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
0 | 8 </package> |
1 | 9 <package name="matplotlib" version="1.4"> |
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ea17a4d6b880
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents:
2
diff
changeset
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10 <repository changeset_revision="9322bf7b9ed1" name="package_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
0 | 11 </package> |
12 <package name="scikit_learn" version="0.15"> | |
13 <install version="1.0"> | |
14 <actions> | |
15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d</action> | |
16 <action type="set_environment_for_install"> | |
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ea17a4d6b880
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents:
2
diff
changeset
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17 <repository changeset_revision="54d5b8add0a8" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
0 | 18 <package name="numpy" version="1.9" /> |
19 </repository> | |
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ea17a4d6b880
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents:
2
diff
changeset
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20 <repository changeset_revision="888bb18d333b" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
0 | 21 <package name="scipy" version="0.14" /> |
22 </repository> | |
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ea17a4d6b880
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents:
2
diff
changeset
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23 <repository changeset_revision="9322bf7b9ed1" name="package_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
1 | 24 <package name="matplotlib" version="1.4" /> |
0 | 25 </repository> |
26 </action> | |
27 | |
28 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
1 | 29 <action type="template_command"> |
30 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
31 python setup.py install --install-lib $INSTALL_DIR/lib/python | |
0 | 32 </action> |
33 <action type="set_environment"> | |
34 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
36 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
37 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
38 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> | |
39 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> | |
40 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> | |
41 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | |
42 </action> | |
43 </actions> | |
44 </install> | |
45 <readme> | |
46 Compiling scikit-learn requires a C compiler (typically gcc). | |
47 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. | |
48 | |
49 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies | |
50 </readme> | |
51 </package> | |
52 </tool_dependency> |