Mercurial > repos > iuc > package_scikit_learn_0_15
view tool_dependencies.xml @ 3:ea17a4d6b880 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit 90f0980ded867989e4e3696170d3a2a373aa3197
author | iuc |
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date | Sun, 17 May 2015 22:44:12 -0400 |
parents | 3e5911e9e134 |
children | b791393983c3 |
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<?xml version="1.0"?> <tool_dependency> <package name="numpy" version="1.9"> <repository changeset_revision="54d5b8add0a8" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="scipy" version="0.14"> <repository changeset_revision="888bb18d333b" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="matplotlib" version="1.4"> <repository changeset_revision="9322bf7b9ed1" name="package_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="scikit_learn" version="0.15"> <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d</action> <action type="set_environment_for_install"> <repository changeset_revision="54d5b8add0a8" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="numpy" version="1.9" /> </repository> <repository changeset_revision="888bb18d333b" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="scipy" version="0.14" /> </repository> <repository changeset_revision="9322bf7b9ed1" name="package_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="matplotlib" version="1.4" /> </repository> </action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="template_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> </action> </actions> </install> <readme> Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies </readme> </package> </tool_dependency>