Mercurial > repos > iuc > package_samtools_0_1_19

changeset 3:05468758117c draft

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Uploaded
author bgruening
date Tue, 11 Mar 2014 15:28:01 -0400
parents 9f412e12b103
children 36aa94676939
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Mar 11 03:35:01 2014 -0400
+++ b/tool_dependencies.xml	Tue Mar 11 15:28:01 2014 -0400
@@ -12,7 +12,8 @@
                         <package name="ncurses" version="5.9" />
                     </repository>
                 </action>
-                <action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
+                <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
+                <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/include/ncurses/ -L$NCURSES_LIB_PATH|g" Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="move_file">
                     <source>samtools</source>