# HG changeset patch
# User bgruening
# Date 1394566081 14400
# Node ID 05468758117c9f19224425eca5ec06a86d82e174
# Parent  9f412e12b103a850dad669c400382027f3fe5723
Uploaded

diff -r 9f412e12b103 -r 05468758117c tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Mar 11 03:35:01 2014 -0400
+++ b/tool_dependencies.xml	Tue Mar 11 15:28:01 2014 -0400
@@ -12,7 +12,8 @@
                         <package name="ncurses" version="5.9" />
                     </repository>
                 </action>
-                <action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
+                <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
+                <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/include/ncurses/ -L$NCURSES_LIB_PATH|g" Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="move_file">
                     <source>samtools</source>