|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="zlib" version="1.2.8">
|
|
|
4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6
|
|
|
7 <package name="readline" version="6.2">
|
|
|
8 <repository changeset_revision="246f31787ca1" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
9 </package>
|
|
|
10
|
|
|
11 <package name="bzlib" version="1.0.6">
|
|
|
12 <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
13 </package>
|
|
|
14
|
|
|
15 <package name="xz" version="5.0.5">
|
|
|
16 <repository changeset_revision="b6876995a7e8" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
17 </package>
|
|
|
18
|
|
1
|
19 <package name="openssl" version="1.0.1">
|
|
0
|
20 <repository changeset_revision="cdd0707dcedd" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
21 </package>
|
|
|
22
|
|
|
23 <package name="sqlite" version="3.8.3">
|
|
|
24 <repository changeset_revision="e3729818491f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
25 </package>
|
|
|
26
|
|
|
27 <package name="gdbm" version="1.11">
|
|
|
28 <repository changeset_revision="7367119a4afc" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
29 </package>
|
|
|
30
|
|
|
31 <package name="ncurses" version="5.9">
|
|
|
32 <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
33 </package>
|
|
|
34
|
|
1
|
35 <package name="python" version="2.7">
|
|
0
|
36 <install version="1.0">
|
|
|
37 <actions>
|
|
|
38 <action type="download_by_url">https://www.python.org/ftp/python/2.7.7/Python-2.7.7.tgz</action>
|
|
|
39
|
|
|
40 <action type="set_environment_for_install">
|
|
|
41 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
42 <package name="zlib" version="1.2.8" />
|
|
|
43 </repository>
|
|
|
44 <repository changeset_revision="246f31787ca1" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
45 <package name="readline" version="6.2" />
|
|
|
46 </repository>
|
|
|
47 <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
48 <package name="bzlib" version="1.0.6" />
|
|
|
49 </repository>
|
|
|
50 <repository changeset_revision="b6876995a7e8" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
51 <package name="xz" version="5.0.5" />
|
|
|
52 </repository>
|
|
|
53 <repository changeset_revision="cdd0707dcedd" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
1
|
54 <package name="openssl" version="1.0.1" />
|
|
0
|
55 </repository>
|
|
|
56 <repository changeset_revision="e3729818491f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
57 <package name="sqlite" version="3.8.3" />
|
|
|
58 </repository>
|
|
|
59 <repository changeset_revision="7367119a4afc" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
60 <package name="gdbm" version="1.11" />
|
|
|
61 </repository>
|
|
|
62 <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
63 <package name="ncurses" version="5.9" />
|
|
|
64 </repository>
|
|
|
65 </action>
|
|
|
66
|
|
|
67 <action type="autoconf" />
|
|
|
68
|
|
2
|
69 <action type="download_file">https://bootstrap.pypa.io/get-pip.py</action>
|
|
|
70 <action type="move_file">
|
|
|
71 <source>get-pip.py</source>
|
|
|
72 <destination>$INSTALL_DIR/bin/pip</destination>
|
|
|
73 </action>
|
|
|
74 <action type="chmod">
|
|
|
75 <file mode="750">$INSTALL_DIR/bin/pip</file>
|
|
|
76 </action>
|
|
|
77
|
|
0
|
78 <action type="set_environment">
|
|
|
79 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
80 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable>
|
|
|
81 <!-- clear PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path. -->
|
|
|
82 <environment_variable action="set_to" name="PYTHONPATH" />
|
|
|
83 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
|
|
|
84 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
|
|
|
85 </action>
|
|
|
86 </actions>
|
|
|
87 </install>
|
|
|
88
|
|
|
89 <readme>
|
|
|
90 The Python programming language version 2.7.
|
|
|
91
|
|
|
92 http://www.python.org
|
|
|
93 </readme>
|
|
|
94
|
|
|
95 </package>
|
|
|
96 </tool_dependency>
|
