Mercurial > repos > iuc > package_numpy_1_9

annotate tool_dependencies.xml @ 9:816d3480b0b1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
author iuc
date Fri, 09 Oct 2015 05:09:17 -0400
parents 43cb426cb05d
children f9289486f06d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
49a8bba001d7 Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
49a8bba001d7 Uploaded
iuc
parents:
diff changeset
2 <tool_dependency>
9
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
3 <package name="atlas" version="3.10.2">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
4 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
5 </package>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
6 <package name="numpy" version="1.9">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
7 <install version="1.0">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
8 <actions>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
9 <action md5sum="a1ed53432dbcd256398898d35bc8e645" type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.2.tar.gz</action>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
11 <action type="set_environment_for_install">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
12 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
13 <package name="atlas" version="3.10.2" />
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
14 </repository>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
15 </action>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
16 <action type="shell_command">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
18 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
20 </action>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
21 <action type="set_environment">
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
23 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
25 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
26 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
27 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
28 </action>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
29 </actions>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
30 </install>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
31 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
816d3480b0b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents: 8
diff changeset
32 </package>
0
49a8bba001d7 Uploaded
iuc
parents:
diff changeset
33 </tool_dependency>