Mercurial > repos > iuc > package_numpy_1_9

annotate tool_dependencies.xml @ 8:43cb426cb05d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 0d7fcf576fd797327af90538b216473ef13daa41
author iuc
date Sat, 23 May 2015 22:51:09 -0400
parents 54d5b8add0a8
children 816d3480b0b1
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="atlas" version="3.10.2">
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4 <repository changeset_revision="4778b172b895" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="numpy" version="1.9">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5=510cee1c6a131e0a9eb759aa2cc62609</action>
54d5b8add0a8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 90f0980ded867989e4e3696170d3a2a373aa3197
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10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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11 <action type="set_environment_for_install">
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12 <repository changeset_revision="4778b172b895" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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13 <package name="atlas" version="3.10.2" />
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14 </repository>
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15 </action>
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16 <action type="shell_command">
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17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
54d5b8add0a8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 90f0980ded867989e4e3696170d3a2a373aa3197
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18 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
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19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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20 </action>
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21 <action type="set_environment">
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22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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24 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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25 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
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26 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
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27 </action>
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28 </actions>
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29 </install>
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30 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
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31 </package>
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32 </tool_dependency>