Mercurial > repos > iuc > package_bedtools_2_18
changeset 0:044d68a0c07f draft
Uploaded
author | iuc |
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date | Fri, 10 Jan 2014 11:35:59 -0500 |
parents | |
children | 15c7aaf75626 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 26 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jan 10 11:35:59 2014 -0500 @@ -0,0 +1,26 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bedtools" version="2.18.2"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone --recursive https://github.com/arq5x/bedtools.git</action> + <action type="shell_command">git reset --hard 393fc3b9b766c76cc62e3f0df4e59ffbff3a55fb</action> + <action type="shell_command">make</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats. + https://github.com/arq5x/bedtools2 + </readme> + </package> +</tool_dependency> + + +