# HG changeset patch
# User iuc
# Date 1389371759 18000
# Node ID 044d68a0c07fdb38c56c7400002d5334042f8376

Uploaded

diff -r 000000000000 -r 044d68a0c07f tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jan 10 11:35:59 2014 -0500
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bedtools" version="2.18.2">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone --recursive https://github.com/arq5x/bedtools.git</action>
+                <action type="shell_command">git reset --hard 393fc3b9b766c76cc62e3f0df4e59ffbff3a55fb</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.
+            https://github.com/arq5x/bedtools2
+        </readme>
+    </package>
+</tool_dependency>
+
+
+