Mercurial > repos > iuc > gemini_actionable_mutations
changeset 8:d4fcc32b7877 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
| author | iuc |
|---|---|
| date | Tue, 31 Aug 2021 08:12:44 +0000 |
| parents | 0288f39941a7 |
| children | 829e70b7b8f3 |
| files | gemini_actionable_mutations.xml gemini_macros.xml repository_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/gemini_actionable_mutations.xml Tue Mar 10 10:07:25 2020 +0000 +++ b/gemini_actionable_mutations.xml Tue Aug 31 08:12:44 2021 +0000 @@ -1,5 +1,6 @@ <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@"> <description>Retrieve genes with actionable somatic mutations via COSMIC and DGIdb</description> + <expand macro="bio_tools"/> <macros> <import>gemini_macros.xml</import> <token name="@BINARY@">actionable_mutations</token>
--- a/gemini_macros.xml Tue Mar 10 10:07:25 2020 +0000 +++ b/gemini_macros.xml Tue Aug 31 08:12:44 2021 +0000 @@ -4,6 +4,12 @@ <!-- minimal annotation files version required by this version of gemini --> <token name="@DB_VERSION@">200</token> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">gemini</xref> + </xrefs> + </xml> + <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">gemini</requirement>
--- a/repository_dependencies.xml Tue Mar 10 10:07:25 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ -<?xml version="1.0" ?> -<repositories description="This requires the GEMINI data manager definition to install all required annotation databases."> - <repository changeset_revision="578b6fcc36e1" name="data_manager_gemini_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"/> -</repositories> \ No newline at end of file