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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 0617f25cbfdca61240f16b85ae21f3cd46b1a44e
author iuc
date Sat, 06 Aug 2022 15:43:32 +0000
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6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
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1 # this is a tab separated file describing the location of nextclade databases used for the
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8b7bb3c635b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 0617f25cbfdca61240f16b85ae21f3cd46b1a44e
iuc
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2 # nextclade viral lineage typing tool
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6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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3 #
6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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4 # the columns are:
6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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5 # value database_name description min_nextclade_version date path
6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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6 #
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8b7bb3c635b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 0617f25cbfdca61240f16b85ae21f3cd46b1a44e
iuc
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7 # min_nextclade_version is the minimum nextclade tool major version that is needed to read the nextclade data
8b7bb3c635b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 0617f25cbfdca61240f16b85ae21f3cd46b1a44e
iuc
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8 #
8b7bb3c635b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 0617f25cbfdca61240f16b85ae21f3cd46b1a44e
iuc
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9 # the database_name refers to which dataset names that, in general, align with species names. for more details see the output of "nextclade dataset list"
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6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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10 #
6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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11 # for example
6e64cb3d2b1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 3d6dabd066dcbe31cfa38fbfac340e253d8a984d
iuc
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12 #sars-cov-2_2022-06-14T12:00:00Z sars-cov-2 SARS-CoV-2 1.10.0 2022-06-14T12:00:00 /srv/galaxy/tool-data/nextclade/sars-cov-2_2022-06-14T12-00-00Z