Mercurial > repos > iuc > crossmap_bed
changeset 3:e5c951338c64 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 39a5f30a013c6d71ea84807b72511e3aa4bab147
| author | iuc |
|---|---|
| date | Fri, 20 Oct 2017 11:31:17 -0400 |
| parents | b0d8635e0161 |
| children | aebc86cb895d |
| files | crossmap_bed.xml macros.xml test-data/cached_locally/liftOver.loc |
| diffstat | 3 files changed, 2 insertions(+), 4 deletions(-) [+] |
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--- a/crossmap_bed.xml Thu Oct 19 12:37:43 2017 -0400 +++ b/crossmap_bed.xml Fri Oct 20 11:31:17 2017 -0400 @@ -91,7 +91,7 @@ </test> <test><!-- clone of first test: tests cached reference chain file --> - <param name="input" value="test_bed_01_input_a.bed" ftype="bed"/> + <param name="input" value="test_bed_01_input_a.bed" ftype="bed" dbkey="hg18"/> <param name="index_source" value="cached"/> <param name="merge_unmapped_entries" value="false" />
--- a/macros.xml Thu Oct 19 12:37:43 2017 -0400 +++ b/macros.xml Fri Oct 20 11:31:17 2017 -0400 @@ -28,9 +28,7 @@ <when value="cached"> <param name="input_chain" type="select" label="Lift Over To"> <options from_data_table="liftOver"> - <!-- <filter type="data_meta" ref="input" key="dbkey" column="0"/> - --> </options> </param> </when>
--- a/test-data/cached_locally/liftOver.loc Thu Oct 19 12:37:43 2017 -0400 +++ b/test-data/cached_locally/liftOver.loc Fri Oct 20 11:31:17 2017 -0400 @@ -29,4 +29,4 @@ #anoCar1 hg18 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain #...etc... -A B ${__HERE__}/aToB.over.chain +hg18 hg19 ${__HERE__}/aToB.over.chain