Mercurial > repos > iuc > bedtools
changeset 16:e30113df8cf6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337
| author | iuc |
|---|---|
| date | Mon, 25 May 2015 22:48:52 -0400 |
| parents | ce2f9b4e4e7c |
| children | a2d4c30ba2f9 |
| files | macros.xml mapBed.xml mergeBed.xml |
| diffstat | 3 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/macros.xml Sat May 23 22:48:56 2015 -0400 +++ b/macros.xml Mon May 25 22:48:52 2015 -0400 @@ -89,10 +89,6 @@ </param> </xml> - <xml name="choose_column"> - <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" /> - </xml> - <token name="@C_AND_O_ARGUMENT@"> #set $col = list() #set $op = list() @@ -108,7 +104,7 @@ <xml name="c_and_o_argument"> <repeat name="c_and_o_argument_repeat" title="Applying operations to columns from merged intervals" min="0"> - <expand macro="choose_column" /> + <yield /> <expand macro="choose_operations"> <expand macro="math_options" /> <expand macro="additional_math_options" />
--- a/mapBed.xml Sat May 23 22:48:56 2015 -0400 +++ b/mapBed.xml Mon May 25 22:48:52 2015 -0400 @@ -30,7 +30,9 @@ label="Require reciprocal overlap" help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" /> <expand macro="strand2" /> - <expand macro="c_and_o_argument" /> + <expand macro="c_and_o_argument"> + <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" /> + </expand> <expand macro="split" /> <expand macro="print_header" /> <conditional name="genome">
--- a/mergeBed.xml Sat May 23 22:48:56 2015 -0400 +++ b/mergeBed.xml Mon May 25 22:48:52 2015 -0400 @@ -28,7 +28,9 @@ label="Maximum distance between features allowed for features to be merged" help="That is, overlapping and/or book-ended features are merged. (-d)"/> <expand macro="print_header" /> - <expand macro="c_and_o_argument" /> + <expand macro="c_and_o_argument"> + <param name="col" type="data_column" data_ref="input" label="Specify the column(s) that should be summarized" help="(-c)" /> + </expand> </inputs> <outputs> <data format="bed" name="output" metadata_source="input" label="Merged ${input.name}"/>