# HG changeset patch
# User iuc
# Date 1432608532 14400
# Node ID e30113df8cf6d5b6c9c0723a317161ee26bfb040
# Parent  ce2f9b4e4e7cdeb24bfcd94a18b6702cca28581c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337

diff -r ce2f9b4e4e7c -r e30113df8cf6 macros.xml
--- a/macros.xml	Sat May 23 22:48:56 2015 -0400
+++ b/macros.xml	Mon May 25 22:48:52 2015 -0400
@@ -89,10 +89,6 @@
         </param>
     </xml>
 
-    <xml name="choose_column">
-        <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" />
-    </xml>
-
     <token name="@C_AND_O_ARGUMENT@">
         #set $col = list()
         #set $op = list()
@@ -108,7 +104,7 @@
 
     <xml name="c_and_o_argument">
         <repeat name="c_and_o_argument_repeat" title="Applying operations to columns from merged intervals" min="0">
-            <expand macro="choose_column" />
+            <yield />
             <expand macro="choose_operations">
                 <expand macro="math_options" />
                 <expand macro="additional_math_options" />
diff -r ce2f9b4e4e7c -r e30113df8cf6 mapBed.xml
--- a/mapBed.xml	Sat May 23 22:48:56 2015 -0400
+++ b/mapBed.xml	Mon May 25 22:48:52 2015 -0400
@@ -30,7 +30,9 @@
             label="Require reciprocal overlap"
             help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" />
         <expand macro="strand2" />
-        <expand macro="c_and_o_argument" />
+        <expand macro="c_and_o_argument">
+            <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" />
+        </expand>
         <expand macro="split" />
         <expand macro="print_header" />
         <conditional name="genome">
diff -r ce2f9b4e4e7c -r e30113df8cf6 mergeBed.xml
--- a/mergeBed.xml	Sat May 23 22:48:56 2015 -0400
+++ b/mergeBed.xml	Mon May 25 22:48:52 2015 -0400
@@ -28,7 +28,9 @@
             label="Maximum distance between features allowed for features to be merged"
             help="That is, overlapping and/or book-ended features are merged. (-d)"/>
         <expand macro="print_header" />
-        <expand macro="c_and_o_argument" />
+        <expand macro="c_and_o_argument">
+            <param name="col" type="data_column" data_ref="input" label="Specify the column(s) that should be summarized" help="(-c)" />
+        </expand>
     </inputs>
     <outputs>
         <data format="bed" name="output" metadata_source="input" label="Merged ${input.name}"/>